A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
/home/runner/work/pmultiqc/pmultiqc/data
pmultiqc
pmultiqc is a MultiQC module to show the pipeline performance of mass spectrometry based quantification pipelines such as nf-core/quantms, MaxQuant, and DIA-NN.URL: https://github.com/bigbio/pmultiqc
Results Overview
Summary Table
| #MS2 Spectra | #Identified MS2 Spectra | %Identified MS2 Spectra | #Peptides Identified | #Proteins Identified |
|---|---|---|---|---|
| 117692 | 116430 | 98.93% | 22252 | 4512 |
HeatMap
Pipeline Result Statistics
| Spectra File | #Peptide IDs | #Protein (group) IDs |
|---|---|---|
| 33060_Control_vs_Infection_JMI | 24935 | 4512 |
Identification Summary
Number of Peptides identified Per Protein
ProteinGroups Count
Peptide ID Count
MS/MS Identified Per Raw File
Quantification Analysis
Peptides Quantification Table
| PeptideID | Protein Name | Peptide Sequence | Best Search Score | Average Intensity |
|---|---|---|---|---|
| 1 | P37108 | AAAAAAAAAPAAAATAPTTAATTAATAAQ | 3.2800 | 5.3110 |
| 2 | P36578 | AAAAAAALQAK | 1.6100 | 6.4913 |
| 3 | Q9P258 | AAAAAWEEPSSGNGTAR | 3.1100 | 5.6168 |
| 4 | P55036 | AAAASAAEAGIATTGTEDSDDALLK | 5.0000 | 5.2036 |
| 5 | Q9NQP4 | AAAEDVNVTFEDQQK | 2.3300 | 6.6695 |
| 6 | P07954 | AAAEVNQDYGLDPK | 3.2700 | 6.2969 |
| 7 | Q9Y490 | AAAFEEQENETVVVK | 3.9900 | 6.0042 |
| 8 | Q96C19 | AAAGELQEDSGLCVLAR | 4.7900 | 5.2964 |
| 9 | O14497 | AAAGQESEGPAVGPPQPLGK | 2.4100 | 5.1141 |
| 10 | Q8TAE8 | AAALAAAVAQDPAASGAPSS | 1.6900 | 5.1676 |
| 11 | P31948 | AAALEFLNR | 2.9300 | 5.9891 |
| 12 | P31948 | AAALEFLNRFEEAK | 4.3100 | 5.7200 |
| 13 | Q15042 | AAAMTPPEEELK | 2.1500 | 5.4049 |
| 14 | P26641 | AAAPAPEEEMDECEQALAAEPK | 4.2600 | 5.1253 |
| 15 | P20810 | AAAPAPVSEAVCR | 2.3000 | 5.3491 |
| 16 | P31350 | AAAPGVEDEPLLR | 2.8400 | 5.5524 |
| 17 | Q16643 | AAAPQAWAGPMEEPPQAQAPPR | 1.8500 | 5.4323 |
| 18 | Q9NVA2 | AAAQLLQSQAQQSGAQQTK | 4.9300 | 5.3460 |
| 19 | O95801 | AAAQYYLGNFR | 1.3300 | 5.3657 |
| 20 | Q9H2M9 | AAASGNENIQPPPLAYK | 1.6700 | 5.2086 |
| 21 | Q7Z5L9 | AAASLAAVSGTAAASLGSAQPTDLGAHK | 3.7300 | 5.4168 |
| 22 | Q8N1S5 | AAATGLPEGPAVPVPSR | 1.5500 | 5.8026 |
| 23 | P49006 | AAATPESQEPQAK | 2.1000 | 4.7022 |
| 24 | O43837 | AAAVPVEFQEHHLSEVQNMASEEK | 1.7300 | 5.6054 |
| 25 | P13796 | AACLPLPGYR | 2.3200 | 6.5701 |
| 26 | Q9UNF0 | AADAVEDLR | 2.3000 | 6.2293 |
| 27 | Q9UBQ7 | AADCEVEQWDSDEPIPAK | 4.0800 | 5.4222 |
| 28 | P55060 | AADEEAFEDNSEEYIR | 4.5500 | 5.4673 |
| 29 | P51452 | AADFIDQALAQK | 2.0800 | 5.8593 |
| 30 | Q63HN8 | AADFLSEPEGGPEMAK | 2.6800 | 5.1954 |
| 31 | Q9Y277 | AADFQLHTHVNDGTEFGGSIYQK | 5.7600 | 5.3097 |
| 32 | Q96ST3 | AADIIDGLR | 1.9600 | 5.7119 |
| 33 | O95782 | AADLLYAMCDR | 2.8800 | 5.3762 |
| 34 | Q15293 | AADLNGDLTATR | 3.2100 | 5.5941 |
| 35 | Q9UBV2 | AADMGNPVGQSGLGMAYLYGR | 3.2900 | 5.3300 |
| 36 | Q9BZL4 | AADPGPGAELDPAAPPPAR | 1.3100 | 5.0574 |
| 37 | P67809 | AADPPAENSSAPEAEQGGAE | 4.8200 | 5.5044 |
| 38 | O60784 | AADRLPNLSSPSAEGPPGPPSGPAPR | 3.8600 | 5.8402 |
| 39 | P80723 | AAEAAAAPAESAAPAAGEEPSK | 4.5300 | 5.6130 |
| 40 | Q969T9 | AAEAAASAYYNPGNPHNVYMPTSQPPPPPYYPPEDK | 2.8300 | 5.3324 |
| 41 | O75569 | AAEAAINILK | 2.2800 | 5.6820 |
| 42 | Q08211 | AAECNIVVTQPR | 3.0700 | 6.1767 |
| 43 | P06454 | AAEDDEDDDVDTK | 3.3100 | 4.5892 |
| 44 | P09496-2 | AAEEAFVNDIDESSPGTEWER | 4.8600 | 5.3579 |
| 45 | P42338 | AAEIASSDSANVSSR | 1.8200 | 5.2559 |
| 46 | Q9BUK6 | AAELLQDEYSGR | 1.8200 | 5.8550 |
| 47 | Q08379 | AAELWGEQAEAR | 2.8100 | 5.3849 |
| 48 | P33176 | AAEMMASLLK | 1.9700 | 5.7108 |
| 49 | Q10471 | AAEVWMDEYK | 1.9200 | 5.4013 |
| 50 | Q9NVZ3 | AAEWQLDQPSWSGR | 3.9800 | 5.4308 |
Protein Quantification Table
| ProteinID | Protein Name | Number of Peptides | Average Intensity |
|---|---|---|---|
| 1 | A0A0B4J271 | 1 | 5.3883 |
| 2 | A0A0B4J2D5 | 5 | 5.9366 |
| 3 | A0A0U1RRE5 | 1 | 5.1452 |
| 4 | A0A804HLA8 | 1 | 5.2940 |
| 5 | A0AV96 | 4 | 5.3425 |
| 6 | A0AVT1 | 15 | 5.7889 |
| 7 | A0FGR8 | 9 | 5.6563 |
| 8 | A0MZ66 | 8 | 5.5114 |
| 9 | A1A4S6 | 1 | 6.0667 |
| 10 | A1L4H1 | 1 | 6.0238 |
| 11 | A1X283 | 3 | 5.5205 |
| 12 | A2A288 | 3 | 5.3013 |
| 13 | A2A2Z9 | 1 | 5.8725 |
| 14 | A2RUS2 | 6 | 5.6169 |
| 15 | A4D1P6 | 4 | 5.7590 |
| 16 | A4D263 | 1 | 5.7322 |
| 17 | A5D8V6 | 1 | 5.9454 |
| 18 | A5D8W1 | 1 | 6.2870 |
| 19 | A5YKK6 | 14 | 5.4653 |
| 20 | A6NC98 | 7 | 5.6973 |
| 21 | A6NCE7 | 1 | 5.9932 |
| 22 | A6NDG6 | 4 | 6.0655 |
| 23 | A6NGH7 | 1 | 6.1800 |
| 24 | A6NHR9 | 7 | 5.6280 |
| 25 | A6NI72 | 11 | 5.7315 |
| 26 | A6NMX2 | 1 | 5.3668 |
| 27 | A6NNS2 | 1 | 6.3075 |
| 28 | A6NNT2 | 1 | 6.5198 |
| 29 | A7E2Y1 | 1 | 6.0884 |
| 30 | A7E2Y1;P35749;P35579;P35579-2;Q7Z406 | 1 | 6.1558 |
| 31 | A8MWD9 | 2 | 5.6763 |
| 32 | A8MXV4 | 1 | 5.1713 |
| 33 | B0I1T2 | 8 | 5.5747 |
| 34 | C9JLW8 | 2 | 5.2823 |
| 35 | C9JR72 | 1 | 4.9286 |
| 36 | E9PAV3 | 3 | 5.6606 |
| 37 | E9PAV3;Q9BZK3 | 1 | 5.6568 |
| 38 | G9CGD6 | 1 | 5.6574 |
| 39 | H7BZ55 | 1 | 5.0486 |
| 40 | L0R6Q1 | 3 | 5.3249 |
| 41 | M0R2J8 | 1 | 5.2644 |
| 42 | O00115 | 5 | 5.7528 |
| 43 | O00116 | 9 | 5.6293 |
| 44 | O00139-2 | 7 | 5.6447 |
| 45 | O00142 | 1 | 5.8434 |
| 46 | O00148 | 3 | 5.6010 |
| 47 | O00148;Q13838 | 9 | 6.0380 |
| 48 | O00151 | 3 | 5.2950 |
| 49 | O00154 | 5 | 5.2994 |
| 50 | O00159 | 3 | 5.3478 |